Scripts for determining risk and prognostic factors for glioma from a case-control study in Australia, as part of the Australian Genomics and Clinical Outcomes of Glioma (AGOG) project. Includes data consolidation, imputation, and odds ratio calculations, as well as their respective visualizations.

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Based upon the Bioconductor SummarizedExperiment container, this package focuses on epidemiological data from questionnaire-based studies. It has containers for raw binary data, directed acyclic graphs, data dictionaries, and multiple data classes for experimental data. It also includes functiona...

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Scripts for analyzing the methylation landscape of the glioma tumor immune environment. This was done as part of my MSc thesis, and looked at generating signature matrices for cell deconvolution, and applied this to heterogenous tumor samples so as to correspond different immune proportions to di...

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Based upon the Bioconductor SummarizedExperiment container, this package focuses on single cell methylation analysis, including importation of .bedgraph and .idat data, and functionality for statistics, dimensionality reduction, imputation, clustering, and numerous visualization options.

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